About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature

Table 3 The real number of scientific articles necessary to generate a literature body of given FPE values

FPE threshold range	Min	Max	Median	Mean	RMSD
(A)
T1	1	29	3	3.82	3.27
T5	5	94	13	16.56	11.09
T10	10	146	26	32.23	19.68
T15	15	184	40	46.94	26.09
T20	20	239	53	62.21	33.46
T25	25	311	65	76.14	39.44
T30	31	363	78	89.36	44.75
T35	37	445	90	102.66	49.86
T40	42	490	100	114.83	54.91
T45	48	514	114	128.42	60.26
T50	53	475	125	140.96	64.85
T75	81	594	187	204.00	85.81
T100	113	868	243.5	267.91	113.82
T500	632	1908	1001	1102.7	339.98
(B)
T1	1	57	2	4.38	5.53
T5	5	232	12	19.68	18.83
T10	10	470	26	39.02	34.94
T15	15	825	41	59.04	52.13
T20	20	1116	56	78.96	69.47
T25	25	1279	70	98.31	86.18
T30	30	1343	85	118.06	102.14
T35	35	1584	100	137.20	114.52
T40	40	1731	115	157.51	132.06
T45	45	2027	129	176.16	147.20
T50	50	2418	145	196.24	164.89
T75	75	2699	218	291.68	238.85
T100	100	2890	291	384.09	310.62
T500	502	10,167	1417	1753.57	1158.06

The letter “T” in abbreviations “T0, T1, etc.” stands for “threshold” applied to FPE values (see Table 2). We list the minimal (Min), maximal (Max), median and mean (together with the respective standard deviation—SD) numbers of articles associated with genes in the year when they crossed certain literature thresholds. As a trend, the number of actual articles is 2–3 times larger than the FPE value itself
Table 3 (A) shows the results for the E.coli literature whereas, (B) presents the data for the body of literature about human genes. Regardless of the taxon, we see similar trends with regard to number of actual publications for a given FPE range

ISSN: 1745-6150