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Table 2 27 high-quality genome drafts from SPAdes/MetaBAT

From: Assessment of urban microbiome assemblies with the help of targeted in silico gold standards

Sample/Bin

Compl.

Cont.

Closest Species

Phenotypic traits

Predicted Proteins

iRep

AAI

ANI

Grip5941 #1

100

0.11

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2341

1.41

97.28

99.89

Grip6354 #1

100

0.55

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2400

1.45

97.30

99.83

Grip6358 #1

98.9

1.23

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2354

1.38

97.34

99.91

Grip6361 #3

98.93

2.34

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2507

n/d

96.05

99.97

Pole5898 #1

99.34

0.55

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2357

1.42

96.67

99.75

Pole6380 #1

99.12

4.23

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2595

n/d

97.07

99.55

Sb5919 #4

99.01

0.66

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2349

1.40

97.46

99.81

Sb5948#2

100

0.13

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2380

1.48

97.03

99.56

Ts5934#1

99.78

1.75

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2441

n/d

96.85

99.76

Ts5963 #1

99.56

0

Propionibacterium acnes

1, 2, 13, 20, 23

2366

1.38

97.39

99.89

Ts6363 #1

100

0.11

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2390

1.34

96.88

99.75

Ts6367 #1

100

0

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2351

1.42

97.12

99.83

Ts6375 #2

99.34

1.86

Propionibacterium acnes

1, 2, 13, 20, 23

2382

1.39

96.92

99.93

Ts5059 #2

100

0

Propionibacterium acnes

1, 2, 13, 15, 20, 23

2313

1.36

97.47

99.86

Metal8994 #2

99.36

0.14

Pseudomonas stutzeri

1, 2, 6, 8–12, 14–18, 21, 23

4151

n/d

95.88

98.03

Metal8994 #5

99.07

0.63

Enterobacter cloacae

1–3, 6, 7, 9–12, 15, 16, 19, 20, 23, 24

4405

n/d

93.51

92.02

Metal9078 #4

98.77

2.9

Pseudomonas stutzeri

1, 2, 4, 6, 8–12, 14–16, 23

4160

n/d

84.17

84.88

Metal9087 #2

100

0.65

Pseudomonas xanthomarina

1, 6, 8–12, 14–16, 23

4048

n/d

86.97

84.58

Metal9150 #4

99.3

1.4

Clostridium difficile

2, 9, 11, 13–16, 22, 23,

2818

n/d

78.26

77.02

Metal9150 #5

99.57

0.42

Stenotrophomonas rhizophila

1, 4, 5, 7, 9, 10, 12, 14, 15, 19, 20, 23

3937

n/d

86.37

84.58

Metal9150 #7

100

0.26

Leoconostoc mesenteroides

1–3, 13, 23

1785

n/d

97.24

99.65

Metal9957 #3

94.52

0.27

Pseudomonas stutzeri

n/d

3954

1.51

96.68

98.09

Metal0032 #2

99.83

0.16

Stenotrophomonas maltophilia

1, 5–10, 14, 15, 19, 20, 23

4069

n/d

76.15

90.47

MePl9373 #2

99.59

0.2

Pseudomonas stutzeri

1, 2, 4, 6, 8–12, 14–16, 18, 23

4157

n/d

84.25

85.30

MePl9832 #7

98.59

3.76

Gottschalkia acidurici

2, 9, 12–16, 23

4227

n/d

74.76

85.30

Wood9044 #4

99.47

0.33

Enterobacter hormaechei

1–3, 6, 9–12, 15, 16, 19, 20, 24

4352

n/d

97.63

99.04

Wood9200 #3

100

0

Weeksella virosa

1, 9, 14, 19, 20, 23

3323

n/d

72.79

74.08

  1. All high-quality genome draft bins from SPAdes/MetaBAT are listed. Sample names are abbreviations of surface names (Sb = Seat backs, Ts = Touchscreen, MePl = Metal/Plastic) and the last four digits of respective SRR ID’s (Additional file 3: Table S2). n/d = values could not be determined as one or more filters failed for calculation. Present number for phenotypic trains indicates a trait being predicted as present (1: aerobe; 2: anaerobe; 3: facultative anaerobe; 4: Type III secretion system; 5: Type IV secretion system; 6: Type VI secretion system; 7: alkane degradation; 8: benzoate degradation via hydroxylation; 9: butyrate producing; 10: chitine degradation; 11: CO assimilation; 12: trimethylamine production via choline; 13: stains gram-positive; 14: bile acid degradation; 15: H2 gas production; 16: self-propelled motion; 17: N2 fixation; 18: fatty acid degradation; 19: hydrolyzing phosphonate; 20: recycles organic phosphorus; 21: oxidizes thiosulfate; 22: produces endospores for persistence; 23: urea degradation; 24: reduces various alpha,beta-unsaturated and nitro compounds)