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Table 6 Gene prioritization results of CLIP-GENE at GSE53398 (Barx2 KO) data

From: CLIP-GENE: a web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments

  Context: Context: Context: Context:
Reported gene Myoblast progeny* Muscle maintenance Chondrogensis Morphogenesis
Gdnf - - - -
Id2 - - - 271
Mmp9 9 29 8 129
Smo - - - -
Sox2 - - - 9
Wisp1 - - - -
Wisp2 - - - -
Ahr - - - -
Axin2 - - - -
Cacna2d3 - - - -
Ccnd1 - - - -
Ccnd2 - - - -
Ctgf - - - -
Dlk1 - - - 319
Fgf7 - - - -
Fst - - - 307
Fzd7 - - - -
Gdf5 - - - -
Igf2 - - - -
Klf5 - - - 96
Pdgfra 4 8 4 573
Pitx2 - - - 4
Tgfb3 - - - 780
Wnt5a - - - -
Fzd4 - - - 193
Fzd6 - - - -
Sfrp1 - - - 188
Tle2 - - - -
Dvl1 - - - 168
Nkd1 - - - -
Porcn - - - 367
Wif1 - - - 74
Wnt4 - - - -
Axin1 - - - -
Fstl1 - - - -
Fstl3 - - - -
Hey1 - - - 122
Hey2 - - - -
Heyl - - - -
Hes1 - - - 34
Hes6 - - - -
Snai1 - - - 295
Snai2 - - - 399
Snai3 - - - 526
Fos - - - -
Nrap - - - -
Id1 - - - 205
reproduced true positives/  
predicted candidates 2/11 2/42 2/12 20/923
  1. The table represents how CLIP-GENE succeed to reproduce and prioritize the reported genes from the data produced study [25]. Genes that are ranked in top 10 are marked with bold font while star (*) represents best performed context