Table 5 Gene prioritization results of CLIP-GENE at GSE54932 (Setd2 KO) data
| Â | Context: | Context: | Context: | Context: |
|---|---|---|---|---|
Reported gene | Endodermal differentiation* | Cell Proliferation | DNA mismatch repair | Histone modification |
Gata6 | 3 | 40 | 15 | 23 |
Sox7 | 6 | 72 | - | - |
Sox17 | - | - | - | - |
Dab2 | 16 | 44 | - | 65 |
Cubn | - | - | - | - |
Cdx2 | 7 | 19 | 5 | 13 |
Psx1 | - | - | - | - |
Fgf5 | - | - | - | - |
Pax6 | - | - | - | - |
T | 2 | 2 | 1 | 2 |
Gata4 | - | - | - | - |
Hnf1b | - | 213 | - | - |
Colora1 | - | - | - | - |
Myo6 | - | - | - | - |
Pfn2 | - | - | - | - |
Cldn1 | - | - | - | - |
Vil1 | - | - | - | - |
Fgfr3 | - | - | - | - |
Fgfr4 | - | 28 | - | - |
Arc | - | - | - | - |
Cd97 | - | - | - | - |
reproduced true positives/ | Â | |||
predicted candidates | 5/24 | 7/278 | 3/23 | 4/98 |