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Table 5 Gene prioritization results of CLIP-GENE at GSE54932 (Setd2 KO) data

From: CLIP-GENE: a web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments

  Context: Context: Context: Context:
Reported gene Endodermal differentiation* Cell Proliferation DNA mismatch repair Histone modification
Gata6 3 40 15 23
Sox7 6 72 - -
Sox17 - - - -
Dab2 16 44 - 65
Cubn - - - -
Cdx2 7 19 5 13
Psx1 - - - -
Fgf5 - - - -
Pax6 - - - -
T 2 2 1 2
Gata4 - - - -
Hnf1b - 213 - -
Colora1 - - - -
Myo6 - - - -
Pfn2 - - - -
Cldn1 - - - -
Vil1 - - - -
Fgfr3 - - - -
Fgfr4 - 28 - -
Arc - - - -
Cd97 - - - -
reproduced true positives/  
predicted candidates 5/24 7/278 3/23 4/98
  1. The table represents how CLIP-GENE succeed to reproduce and prioritize the reported genes from the data produced study [24]. Genes that are ranked in top 10 are marked with bold font while star (*) represents best performed context