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Table 4 Gene prioritization results of CLIP-GENE at GSE47851 (Gata3 KO) data

From: CLIP-GENE: a web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments

 

Context:

Context:

Context:

Context:

Reported gene

Immune regulation*

Inflammatory response

Cell differentiation

Cell proliferation

Relb

144

56

117

209

Nfkb2

-

-

-

-

Tnfrsf9

236

246

408

751

Tnfrsf21

-

-

-

-

Icos

16

44

9

66

Cysltr1

186

282

392

638

Kit

-

-

-

-

Il1r2

-

203

-

483

Il13

4

37

44

125

Il5

5

50

52

149

Areg

71

87

154

96

Il1rl1

67

109

237

507

Ccr8

108

88

281

643

Tph1

216

180

86

222

Htr1b

-

-

-

-

Cd244

-

-

-

-

Lta

19

5

122

203

Il10

8

4

47

74

Tnf

1

1

1

2

Nfkbia

-

33

341

563

Cdkn2b

78

256

255

122

Lif

-

-

-

402

Il2ra

84

206

88

546

Il9r

165

351

398

-

Il24

-

436

343

-

reproduced true positives/

 

predicted candidates

16/260

19/536

18/613

18/896

  1. The table represents how CLIP-GENE succeed to reproduce and prioritize the reported genes from the data produced study [19]. Genes that are ranked in top 10 are marked with bold font while star (*) represents best performed context