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Table 1 Details on 53 uncharacterised bacterial proteins related to nucleotide cyclases. The description of these proteins is provided in Additional file 3a

From: Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria

Sr. No.

UniProt ID

Protein length

Bacterial lineage

Key residuesa

Predicted nucleotide cyclase

MB

SS

TS

1.

A0A023BRE9

362

Bacteroidetes

D, D

E, K

H, R

GC

2.

A0A024K0K6

242

Actinobacteria

D, D

E, K

H, R

GC

3.

A0A049E877

242

Actinobacteria

D, D

K, E

R

AC/GC

4.

A0A051TVK8

242

Actinobacteria

D, D

K, E

R

AC/GC

5.

A0A077KSK0

184

Bacteroidetes

D, D

E, K

H, Q

GC

6.

A0A077XT73

217

Bacteroidetes

D, D

E, K

H, R

GC

7.

A0A0A1S331

184

Bacteroidetes

D, D

E, K

H, Q

GC

8.

A0A0D3LAF1

210

Bacteroidetes

D, D

E, K

H, Y

GC

9.

A0A0D3LE21

204

Bacteroidetes

D, D

E, R

H, R

GC

10.

A0A0E0YUB2

245

Actinobacteria

D, D

K, E

R

AC/GC

11.

A0PR68

213

Actinobacteria

D

K, E

R

AC/GC

12.

A2VKS0

245

Actinobacteria

D, D

K, E

R

AC/GC

13.

A3XLF9

209

Bacteroidetes

D, D

E, K

H, R

GC

14.

A4AND1

360

Bacteroidetes

D, D

E, K

H, R

GC

15.

B2HFJ8

244

Actinobacteria

D, D

K, E

R

AC/GC

16.

C6VRW6

359

Bacteroidetes

D, D

E, K

H, Q

GC

17.

C7PDP1

360

Bacteroidetes

D, D

E, K

H, Q

GC

18.

D5B9L7

192

Bacteroidetes

D, D

E, K

H, R

GC

19.

D5BA05

215

Bacteroidetes

D, D

E, K

H, H

GC

20.

D5BC46

217

Bacteroidetes

D, D

E, K

H, Q

GC

21.

D5P7L7

242

Actinobacteria

D, D

K, E

R

AC/GC

22.

D6FJC9

245

Actinobacteria

D, D

K, E

R

AC/GC

23.

D7W7Q4

183

Bacteroidetes

D, D

E, K

H, Q

GC

24.

E3FM84

240

Proteobacteria

D, D

K, E

R

AC/GC

25.

F8C8H4

241

Proteobacteria

D, D

K, E

R

AC/GC

26.

G0IYZ8

370

Bacteroidetes

D, D

E, K

H, R

GC

27.

H8ITY9

242

Actinobacteria

D, D

K, E

R

AC/GC

28.

H8MLI0

243

Proteobacteria

D, D

K, E

R

AC/GC

29.

I2ACB6

242

Actinobacteria

D, D

K, E

R

AC/GC

30.

I4EWW4

239

Actinobacteria

D, D

E, K

H, R

GC

31.

J1KMR1

196

Bacteroidetes

D, D

E, K

H, C

GC

32.

J3CNM3

188

Bacteroidetes

D, D

E, K

H, Q

GC

33.

J4JVX3

242

Actinobacteria

D, D

K, E

R

AC/GC

34.

L7U9J7

249

Proteobacteria

D, D

K, E

R

AC/GC

35.

L7V7X7

244

Actinobacteria

D, D

K, E

R

AC/GC

36.

M7NQG3

205

Bacteroidetes

D, D

E, R

H, R

GC

37.

P9WL99

212

Actinobacteria

D

K, E

R

AC/GC

38

Q1DBS3

241

Proteobacteria

D, D

K, E

R

AC/GC

39.

R4MJ84

245

Actinobacteria

D, D

K, E

R

AC/GC

40.

S7VP22

364

Bacteroidetes

D, D

E, K

H, R

GC

41.

T0P495

189

Bacteroidetes

D, D

E, K

H, R

GC

42.

U1IMS0

385

Proteobacteria

D, D

K, E

R

AC/GC

43.

U2U286

241

Proteobacteria

D, D

K, E

R

AC/GC

44.

U5WU67

242

Actinobacteria

D, D

K, E

R

AC/GC

45.

V7J481

242

Actinobacteria

D, D

K, E

R

AC/GC

46.

W4HRV4

242

Actinobacteria

D, D

K, E

R

AC/GC

47.

W4M0R9

361

Proteobacteria

D, D

E, K

H, R

GC

48.

W4T6K0

183

Bacteroidetes

D, D

E, K

H, Q

GC

49.

W6TY48

354

Bacteroidetes

D, D

E, K

H, Q

GC

50.

W8FCI6

383

Bacteroidetes

D, D

E, K

H, R

GC

51.

X7T6Z9

242

Actinobacteria

D, D

K, E

R

AC/GC

52.

X7YDH7

236

Actinobacteria

D, D

K, E

R

AC/GC

53.

X7YQD0

242

Actinobacteria

D, D

K, E

R

AC/GC

  1. aThe key conserved residues are categorised into metal-binding (MB), substrate-specifying (SS) and transition-state (TS) or other stabilising residues. Single-letter codes for amino acids are used. Entries in italics highlight the proteins with single metal-binding aspartate