Fig. 1
From: Estimation of ribosome profiling performance and reproducibility at various levels of resolution
Comparison of ribosomal densities. a Scatter plot for all genes in zebrafish, where the x-axis represents the Ribo-seq read count density (RCD) of a gene in one replicate of the Bazzini-2012 dataset [14] (WT, 6hpf), while the y-axis represents RCD in a second replicate. Spearman’s rho, p-value and the number of points are denoted above the plot. This is the lowest correlation obtained between replicates in this analysis. b Same for the Ingolia-2011 dataset [38] (w/LIF, 60s CHX). This is the median correlation obtained between replicates in this analysis. c Same for the Brar-2012 dataset [12] (meiotic stage). This is the highest correlation obtained between replicates in this analysis. d The correlation between all pairs of replicates for all genes and for the subset of 20 % highly expressed genes in each dataset