Skip to main content

Table 1 Data used for our three approaches

From: Prediction of problematic complexes from PPI networks: sparse, embedded, and small complexes

Feature

Description

SWC

DECOMP

SSS

P P I

PPI reliability

STRING

Functional association

 

LIT

Literature co-occurrence

 

D E G PPI

PPI topological degree

  

D E G STRING

STRING topological degree

  

D E G LIT

LIT topological degree

  

S H A R E D PPI

PPI shared neighbours

 

S H A R E D STRING

STRING shared neighbours

  

S H A R E D LIT

LIT shared neighbours

  

N B C PPI

PPI neighbourhood connectivity

  

N B C STRING

STRING neighbourhood connectivity

  

N B C LIT

LIT neighbourhood connectivity

  

ISO

Isolatedness