Fig. 2From: Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assemblyThe PatchDock’ model of the Apaf-1/cytochrome c complex after energy minimization (see text). Contacts between cytochrome c and Apaf-1 are shown in blue (lysine residues) and magenta (aspartate and glutamate residies). The negatively charged patch of conserved residues 62–65 of cytochrome c is shown in green. The cytochrome c backbone and the heme are shown in cyan, the WD domains are shown in pink, and the rest of Apaf-1 monomer is colored red. Amino acid numbering is as in [PDB:3J2T]Back to article page