Table 1 In silico prediction of antibiotic resistance genes in our consensus genome
From: Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool
Class | Best match | Length | GC content | Best hits with organism | Similarity | Coverage | Accession number |
|---|---|---|---|---|---|---|---|
(aa) | (%) | (%) | (%) | ||||
Beta-Lactamases | cfxA | 332 | 51 | Akkermansia muciniphila ATTCBAA-835 | 100 | 100 | WP031930069 |
| Â | tlaA | 258 | 60 | Akkermansia muciniphila ATTCBAA-835 | 97 | 84 | YP001876808 |
| Â | Beta-lactamase domain protein | 298 | 60,7 | Akkermansia muciniphila ATTCBAA-835 | 100 | 87 | YP001877266 |
| Â | CphA2 | 403 | 60,8 | Akkermansia muciniphila ATTCBAA-835 | 99 | 95 | YP297581 |
| Â | Act | 323 | 60,8 | Akkermansia muciniphila ATTCBAA-835 | 99 | 85 | YP001876732 |
| Â | Metal-dependent hydrolases of the beta-lactamase superfamily | 348 | 63,6 | Akkermansia muciniphila ATTCBAA-835 | 99 | 75 | YP001877492 |
| Â | Metall o-beta-1actamase family protein | 468 | 56,5 | Akkermansia muciniphila ATTCBAA-835 | 99 | 100 | YP001876862 |
| Â | Zn-dependent hydro1ase | 274 | 59,8 | Akkermansia muciniphila ATTCBAA-835 | 96 | 98 | YP001877763 |
Glycopeptides | vanX; D-ala D-ala dipeptidase | 234 | 56.6 | Akkermansia muciniphila ATTCBAA-835 | 99 | 95 | YP001878228 |
MLS | mefA; macrolid efflux pump | 401 | 49,2 | Akkermansia muciniphila ATTCBAA-835 | 100 | 100 | WP031931063 |
| Â | ermB; erythromycin ribosome methy1ase | 245 | 45 | Akkermansia muciniphila ATTCBAA-835 | 100 | 100 | WP012420167 |
| Â | o1ec; macrolid ABC transporter protein | 702 | 61,9 | Akkermansia muciniphila ATTCBAA-835 | 65 | 100 | WP012419164 |
Phenicol | catA3; chloramphenica1 acetyltransferase | 211 | 56 | Akkermansia muciniphila ATTCBAA-835 | 99 | 100 | YP001876953 |
Su1phonamide | sulII; dihydropteroate synthase | 279 | 65,7 | Akkermansia muciniphila ATTCBAA-835 | 49 | 100 | YP001877991 |
Tetracyclin | tetO | 639 | 51,2 | Akkermansia muciniphila ATTCBAA-835 | 100 | 100 | WP012419363 |
Trimethoprim | dfrA3: dihydrofolate reductase | 122 | 57,8 | Akkermansia muciniphila ATTCBAA-835 | 99 | 75 | YP001878622 |