Genome-wide association study for posthitis in the free-living population of European bison (Bison bonasus)

Oleński, Kamil; Tokarska, Małgorzata; Hering, Dorota Maria; Puckowska, Paulina; Ruść, Anna; Pertoldi, Cino; Kamiński, Stanisław

doi:10.1186/s13062-014-0033-6

Biology Direct

Table 1 SNPs with highest effects on the posthitis incidence

From: Genome-wide association study for posthitis in the free-living population of European bison (Bison bonasus)

SNP id	Chr	SNP position	Closest candidate gene			Reference
SNP id	Chr	SNP position	Symbol	Distance from SNP marker (bp)	Name	Reference
rs110456748	15	45238956	OR10A3	23846	Olfactory receptor, family 10, subfamily A, member 3	[20]
rs136792896	15	45252852	OR10A3	37742	Olfactory receptor, family 10, subfamily A, member 3
rs109096473	15	45264139	LOC539064	46997	Olfactory receptor 1030-like
rs43150190	15	45271797	LOC539064	39339	Olfactory receptor 1030-like
rs134156378	15	46596723	LOC516636	6473	Olfactory receptor 6-like
rs42993236	15	47910912	LOC507428	1314	Olfactory receptor, family 52, subfamily N, member 2-like
rs41986233	15	48091239	LOC787878	0	Putative olfactory receptor 56B2-like
rs41986306	15	48143907	LOC100139556	3799	Olfactory receptor 56B1-like
rs42503200	15	45475858	LOC782645	2580	Olfactory receptor, family 10, subfamily R, member 2-like
rs136242790	15	45239543	OR10A3	24433	Olfactory receptor, family 10, subfamily A, member 3
rs109730608	15	46420735	OR2D3	1737	Olfactory receptor, family 2, subfamily D, member 3
rs42505727	15	45714724	PPFIBP2	0	PTPRF interacting protein, binding protein 2 (liprin beta 2)	[22]
rs41597707	15	45743620	PPFIBP2	0
rs43674350	15	45773658	PPFIBP2	0
rs43674363	15	45779930	PPFIBP2	0
rs41766565	15	45858786	OLFML1	0	Olfactomedin-like 1	[23]
rs133100902	15	45865065	OLFML1	0	Olfactomedin-like 1	[23]
rs134495844	15	46365446	ZNF214	3184	Zinc finger protein 214	[18]
rs110088444	26	25589629	SORCS3	0	Sortilin-related VPS10 domain containing receptor 3	-
rs137458105	13	48582285	LRRN4	0	Leucine rich repeat neuronal 4	-
rs134132514	9	10444161	B3GAT2	142985	Beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	-
rs137024050	12	22730025	COG6	0	Component of oligomeric golgi complex 6	[20]
rs133483310	12	22928947	LHFP	0	Lipoma HMGIC fusion partner	[19]
rs137427505	12	23622735	UFM1	62366	Ubiquitin-fold modifier 1	-
rs134255411	3	109983658	CSF3R	78187	Colony stimulating factor 3 receptor (granulocyte)	[28]

Top 25 SNP markers showing the highest effect associated with the incidence of posthitis (with FDR correction) and suggested candidate genes located in the closest vicinity to significant marker.

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ISSN: 1745-6150

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