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Table 2 M. abscessus HGT cases

From: Mycobacteriophage-drived diversification of Mycobacterium abscessus

Putative HGT

Homology

Parent species

Recipient species

Donor species

Nb duplications before parent

1

PHAGE_Mycoba_Peaches-gi|282598664|ref|YP_003358761.1|gp58[Mycobacterium_phage_Peaches]

[M93]

[6G-0125-R]

[M93]

5

2

PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD]

[PSEUDO ~ −5S-0421]

[M94]

[M93 M115]

4

3

PHAGE_Mycoba_LeBron-gi|304360967|ref|YP_003857149.1|gp18[Mycobacterium_phage_LeBron]

[M115]

[M172]

[M115]

2

4

PHAGE_Mycoba_Giles-gi|160700672|ref|YP_001552352.1|gp23[Mycobacterium_phage_Giles]

[M94]

[6G-0728-R]

[M94]

5

5

PHAGE_Mycoba_Che9c-gi|29566118|ref|NP_817687.1|gp10[Mycobacterium_phage_Che9c]

[M18]

[3A-0122_S]

[M18]

2

6

PHAGE_Mycoba_Pukovnik-gi|192824238|ref|YP_001994879.1|gp62[Mycobacterium_phage_Pukovnik]

[M154]

[M115]

[M154]

5

7

PHAGE_Tricho_2c-gi|116326757|ref|YP_803294.1|hypotheticalproteinTNAV2c_gp071[Trichoplusia_ni_ascovirus_2c]

[5S-0921]

[4S-0726]

[5S-0921]

4

8

PHAGE_Salmon_PVP_SE1-gi|363539742|ref|YP_004894027.1|hypotheticalprotein[SalmonellaphagePVP-SE1]

[M. massiliense T]

[M24]

[M. massiliense T]

5

9

PHAGE_Rhodoc_REQ3-gi|372449972|ref|YP_005087193.1|phageintegrase[RhodococcusphageREQ3]

[M172]

[3A_0930_S]

[M172]

3

10

PHAGE_Salmon_PVP_SE1-gi|363539618|ref|YP_004893903.1|phosphoribosylpyrophosphatesynthetase[SalmonellaphagePVP-SE1]

[3A-0122_S1]

[M. massiliense T]

[3A-0122_S1]

5

11

PHAGE_Mycoba_Myrna-gi|203454746|ref|YP_002225062.1|gp183[Mycobacterium_phage_Myrna]

[M172]

[M94]

[M172]

5

12

PHAGE_Mycoba_Omega-gi|29566822|ref|NP_818386.1|gp85[Mycobacterium_phage_Omega]

[M115]

[M24]

[M115]

5

13

PHAGE_Mycoba_Pacc40-gi|206600097|ref|YP_002241602.1|gp18[Mycobacterium_phage_Pacc40]

[M24]

[M94]

[M24]

6

14

PHAGE_Mycoba_Pacc40-gi|206600097|ref|YP_002241602.1|gp18[Mycobacterium_phage_Pacc40]

[PSEUDO ~ − M159]

[M24]

[M172 3A-0122_S6 3A-0122_S2 3A-0122_S4 47 J26]

1

15

PHAGE_Acanth_mimivirus-gi|311977570|ref|YP_003986690.1|DNAtopoisomerase1b[Acanthamoebapolyphagamimivirus]

[3A-0122_S7]

[3A-0122_S5]

[3A-0122_S7]

2

16

PHAGE_Rhodoc_RER2-gi|372449922|ref|YP_005087145.1|hypotheticalprotein[RhodococcusphageRER2]

[M24]

[3A-0731]

[M24]

3

17

PHAGE_Aeromo_31-gi|66391812|ref|YP_238737.1|hypotheticalproteinPHG31p8[Aeromonas_phage_31]

[4S-0726]

[4S-0303]

[4S-0726]

6

18

PHAGE_Lactoc_P087-gi|229605000|ref|YP_002875699.1|putativecysteinesynthase[Lactococcus_phage_P087]

[47 J26]

[5S-0708]

[47 J26]

6

19

PHAGE_Mycoba_Myrna-gi|203454746|ref|YP_002225062.1|gp183[Mycobacterium_phage_Myrna]

[M172]

[M94]

[M172]

5

20

PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD]

[3A-0122_S5]

[M94]

[3A-0122_S5]

2

21

PHAGE_Acanth_mimivirus-gi|311977513|ref|YP_003986633.1|putativedTDP-D-glucose4,6-dehydratase[Acanthamoebapolyphagamimivirus]

[3A-0122_S4]

[4S-0726-RA]

[3A-0122_S4]

4

22

PHAGE_Bacill_36-gi|156564011|ref|YP_001429750.1|PcrAhelicase[Bacillus_phage_0305phi8_36]

[3A-0122_S7]

[3A-0119-R]

[3A-0122_S7]

3

23

PHAGE_Mycoba_Che9c-gi|29566174|ref|NP_817745.1|gp68[Mycobacterium_phage_Che9c]

[M18]

[M94]

[M18]

3

24

PHAGE_Mycoba_Che8-gi|29565783|ref|NP_817355.1|gp17[Mycobacterium_phage_Che8]

[M24]

[M172 3A-0122_S4 3A-0122_S2 47 J26]

[M24]

2

25

PHAGE_Tricho_2c-gi|116326757|ref|YP_803294.1|hypotheticalproteinTNAV2c_gp071[Trichoplusia_ni_ascovirus_2c]

[M115]

[4S-0116_S]

[M115]

3

26

PHAGE_Microm_MpV1-gi|313768434|ref|YP_004062114.1|hypotheticalprotein[Micromonassp.RCC1109virusMpV1]

[M115]

[M94]

[M115]

3

27

PHAGE_Mycoba_Pipefish-gi|109521870|ref|YP_655307.1|gp30[Mycobacterium_phage_Pipefish]

[M18]

[M172]

[M18]

1

28

PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD]

[M. bolletii T]

[4S-0726-RA]

[M. bolletii T]

7

29

PHAGE_Lactoc_P087-gi|229605000|ref|YP_002875699.1|putativecysteinesynthase [Lactococcus_phage_P087]

[M24]

[M. bolletii T]

[M24]

7

30

PHAGE_Mycoba_Omega-gi|29566768|ref|NP_818332.1|gp31[Mycobacterium_phage_Omega]

[M94]

[6G-1108]

[M94]

3

31

PHAGE_Burkho_phi1026b-gi|38707948|ref|NP_945089.1|gp58[Burkholderia_phage_phi1026b]

[PSEUDO ~ −M154]

[M. bolletii T]

[M. massiliense T M154 M172 M159]

6

32

PHAGE_Mycoba_Cjw1-gi|29565933|ref|NP_817504.1|gp55[Mycobacterium_phage_Cjw1]

[PSEUDO ~ −M159]

[M. bolletii T]

[M172 3A-0122_S0 1S-152-0930 3A-0122_S1]

2

33

PHAGE_Brocho_BL3-gi|327409421|ref|YP_004301563.1|gp29[BrochothrixphageBL3]

[M115]

[M24]

[M115]

5

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