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Table 1 The ancestral NCLDV genes represented in Pandoraviruses

From: Pandoraviruses are highly derived phycodnaviruses

Gene/NCVOG

P. dulcisgenes

P. salinusgenes

Presence in the 7 NCLDV familiesa

Best hit for Pandoravirusesb/ % identity/alignment length

YqaJ viral recombinase family (pfam09588)/NCVOG1192

516302776

516304314

4

Guillardia theta CCMP2712 (Cryptophyta) /31/212

D5-like helicase-primase/NCVOG0023

516302795

516304338

7

Bathycoccus sp. RCC1105 virus BpV2 (Phycodnaviridae) /33/579

ribonucleoside diphosphate reductase, alpha subunit/NCVOG1353

516303570

516306316

5

Thiothrix flexilis (Proteobacteria) /36/1011

Ribonucleotide reductase small subunit; apparent eukaryotic origin/NCVOG0276

516302977

516306307

7

Thalassiosira pseudonana CCMP1335 (Stramenopiles) /75/216

dUTPase (cl00493)/NCVOG1068

516303522

516305829

3

Hordeum vulgare subsp. vulgare (Viridiplantae) /58/153

DNA or RNA helicases of superfamily II (COG1061) (A18hel)/NCVOG0076

516302732

516304266

5

Ectocarpus siliculosus virus 1 (Phycodnaviridae) /35/238

pfam04947, Poxvirus Late Transcription Factor VLTF3 like (A2L)/NCVOG0262

516302769, 516303263

516304304, 516305311

7

Emiliania huxleyi virus 202 (Phycodnaviridae) /34/264

Transcription factor S-II (TFIIS)-domain-containing protein/NCVOG0272

516303039

516304685

7

Mus musculus (Opisthokonta) /27/278

Nudix hydrolase (D10 ortholog)/NCVOG0236

 

516305246

5

Vitis vinifera (Viridiplantae) /28/226

A32-like packaging ATPase/NCVOG0249

516302762, 516303626

516306303, 516303793, 516305958, 516303807, 516305953

7

Ostreococcus tauri virus 2 (Phycodnaviridae) /45/247

uracil-DNA glycosylase/NCVOG1115

516303571

516305889

3

Congregibacter litoralis (Proteobacteria) /50/242

cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases/NCVOG0040

516303124, 516303141

516304931, 516304951

3

Lausannevirus (Marseillevirus family) /41/149

RING-finger-containing E3 ubiquitin ligase (COG5432: RAD18)/NCVOG0330

516302773

 

6

Vitis vinifera (Viridiplantae) /43/76

DNA-directed RNA polymerase subunit alpha/NCVOG0274

516302695

516306301

7

Cyanidioschyzon merolae strain 10D (Rhodophyta) /35/877

DNA-directed RNA polymerase subunit beta /NCVOG0271

516302872

516306305

7

Capsella rubella (Viridiplantae) /38/1283

disulfide (thiol) oxidoreductase; Erv1/Alr family (pfam04777)/NCVOG0052

516302900

516304490

7

Setosphaeria turcica Et28A (Opisthokonta) /37/123

  1. a)The families are: Poxviridae, Asfarviridae, Iridoviridae, Ascoviridae, Marseilleviridae, Phycodnaviridae, Mimiviridae.
  2. b)Genebank IDs of the genes for which the best hit is included are shown in bold.