Principle Method | Reference | Test type | Software |
---|---|---|---|
Over-representation analysis (hypergeometric test) | [67] | parametric | GOstats |
GSEA | [68] | non-parametric | GSEABase |
 | [27] | non-parametric | |
GSA | [69] | non-parametric | |
GSEArot | [70] | non-parametric | limma |
GAGE | [71] | parametric | GAGE |
PAGE | [72] | parametric | PGSEA, GAGE |
Random Set | [73] | parametric | part of CLEAN |
Generalized Random Sets | [74] | parametric | |
Gene set enrichment analysis made simple | [75] | parametric | Â |