Resource | Description & availability |
---|---|
Data as a Service (DaaS): | |
AWS Public Datasets | Cloud-based archives of GenBank, Ensembl, 1000 Genomes, Model Organism Encyclopedia of DNA Elements, Unigene, Influenza Virus, etc.; http://aws.amazon.com/publicdatasets |
Software as a Service (SaaS): | |
BGI Cloud (unpublished) | Cloud-based implementations of various genomic analysis applications; http://cloud.genomics.cn |
CloudAligner [16] | Fast and full-featured MapReduce-based tool for sequence mapping; http://cloudaligner.sourceforge.net |
CloudBLAST [19] | A cloud-based implementation of NCBI BLAST; http://ammatsun.acis.ufl.edu/amwiki/index.php/CloudBLAST_Project |
CloudBurst [17] | Highly sensitive short read mapping with MapReduce; http://cloudburst-bio.sourceforge.net |
Contrail (unpublished) | Cloud-based de novo assembly of large genomes; http://contrail-bio.sourceforge.net |
Crossbow [18] | Read Mapping and SNP calling using cloud computing; http://bowtie-bio.sf.net/crossbow |
EasyGenomics (unpublished) | Cloud-based NGS pipelines for whole genome resequencing, exome resequencing, RNA-Seq, small RNA and de novo assembly; http://www.easygenomics.org |
eCEO [26] | Cloud-based identification of large-scale epistatic interactions in genome-wide association study (GWAS); http://www.comp.nus.edu.sg/~wangzk/eCEO.html |
FX [20] | RNA-Seq analysis tool; http://fx.gmi.ac.kr |
Gaea (unpublished) | Cloud-based genome re-sequencing assembly; http://bgiamericas.com/data-analysis/cloud-computing |
Hecate (unpublished) | Cloud-based de novo assembly; http://bgiamericas.com/data-analysis/cloud-computing |
Jnomics (unpublished) | Cloud-scale sequence analysis suite based on Apache Hadoop; http://sourceforge.net/apps/mediawiki/jnomics |
Myrna [21] | Differential gene expression tool for RNA-Seq; http://bowtie-bio.sourceforge.net/myrna |
PeakRanger [24] | Cloud-enabled peak caller for ChIP-seq data; http://www.modencode.org/software/ranger |
RSD [23] | Reciprocal smallest distance algorithm for ortholog detection using Amazon's Elastic Computing Cloud; http://roundup.hms.harvard.edu |
VAT [25] | Variant annotation tool to functionally annotate variants from multiple personal genomes at the transcript level; http://vat.gersteinlab.org |
YunBe [22] | Pathway-based or gene set analysis of expression data; http://tinyurl.com/yunbedownload |
Platform as a Service (PaaS): | |
Eoulsan [27] | Cloud-based platform for high throughput sequencing analyses; http://transcriptome.ens.fr/eoulsan |
Cloud-scale Galaxy for large-scale data analysis; http://galaxy.psu.edu | |
Infrastructure as a Service (IaaS): | |
Cloud BioLinux [30] | A publicly accessible virtual machine for high performance bioinformatics computing using cloud platforms; http://cloudbiolinux.org |
CloVR [31] | A portable virtual machine for automated sequence analysis using cloud computing; http://clovr.org |