Table 5 The ten chromosomes with the highest named missed gene rates
From: Thousands of missed genes found in bacterial genomes and their analysis with COMBREX
Genome | Accession # | Genome size (Mbp) | Missed genes per Mbp | Total missed genes | % Missed genes <= 300 bp | Shortest annotated gene (bp) |
|---|---|---|---|---|---|---|
N. gonorrhoeae FA 1090 | AE004969 | 2.15 | 107.7 | 232 | 35.3% | 108 |
L. fermentum CECT 5716 | CP002033 | 2.10 | 106.6 | 224 | 12.9% | 189 |
S. glossinidius str. ‘morsitans’ | AP008232 | 4.17 | 89.7 | 374 | 25.4% | 99 |
E. coli APEC 01 | CP000468 | 5.08 | 62.0 | 315 | 69.8% | 240 |
C. tetani E88 | AE015927 | 2.80 | 55.7 | 156 | 87.8% | 303 |
B. thurengiensis str. Al Hakam | CP000485 | 5.26 | 52.9 | 278 | 61.5% | 138 |
S. pneumoniae INV104 | FQ312030 | 2.14 | 52.3 | 112 | 50.0% | 99 |
Y. pestis Z176003 | CP001593 | 4.55 | 50.9 | 232 | 100.0% | 300 |
Y. pestis D106004 | CP001585 | 4.64 | 50.9 | 236 | 99.6% | 300 |
Y. pestis D182038 | CP001589 | 4.63 | 50.8 | 235 | 100.0% | 300 |