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Table 1 Strains affiliation, isolating medium characteristics and physiological and genetic properties of the isolated strains

From: Novel and unexpected bacterial diversity in an arsenic-rich ecosystem revealed by culture-dependent approaches

Taxonomy

Isolation Medium

Metabolism and genetic

Strains affiliation (isolates)

Closest type strain / identity (acc. num.)

Name

CAA%

pH

aioA gene amplification

arsenite oxidation

cellulose degradation

Acidobacteria bacterium

Acidobacterium capsulatum ATCC 51196 / 94% (NR_043386)

      

(N3B)

 

FD2

0.01

5.5

-

-

-

Bacillus sp.

[Brevibacterium] frigoritolerans DSM 8801 / 99% (NR_042639)

      

(Q9*)

 

LB

-

7

-

-

-

Paenibacillus sp.

Paenibacillus taichungensis BCRC 17757 / 99% (NR_044428)

      

(Q8*)

 

LB

-

7

-

-

+

Cellulomonas sp.

Cellulomonas chitinilytica X.bu-b / 97% (NR_041511)

      

(O1)

 

FD1

0.01

3.5

   

(E10, J12, J13, J14, J16, K13 K5, K6, K8, L7, L8, L9, L11, L14, L15, P2, U3)

 

FD2

0.01

5.5

-

-

-

Streptomyces sp.

Streptomyces atratus NRRL B-16927 / 99% (NR_043490)

      

(H7)

 

FD2

0.01

5.5

-

-

-

Propionibacteriaceae

Luteococcus peritonei CCUG38120 / 95% (NR_028882)

      

(H7p)

 

FD2

0.01

5.5

-

-

-

Arthrobacter sp.

Arthrobacter albidus LC13 / 98% (NR_041403)

      

(J9)

 

FD2

0.01

5.5

-

-

-

Micrococcus sp.

Micrococcus yunnanensis YIM / 99% (FJ214355)

      

(Q7*)

 

LB

-

7

-

-

-

Rhodococcus sp.

Rhodococcus erythropolis N11 / 99% (NR_037024)

      

(U2)

 

FD2

0.01

5.5

-

-

-

Micromonospora sp.

Micromonospora coriariae NAR0 / 99% (NR_042314)

      

(X14)

 

1/100 YPD + 100 mg/l As(V)

-

8

+

-

+

Acidocella sp.

Acidocella facilis / 99% (NR_025852)

      

(Q3*, Q6*)

 

FD1

0.01

3.5

   

(I10)

 

FD2

0.01

5.5

-

-

-

(L5, Q1*, Q2*, Q4*, Q5*)

 

FD4

0.1

5.5

   

Acidisoma sp.

Acidisoma tundrae WM1 / 98% (NR_042705)

      

(K16, L2)

 

FD1

0.01

3.5

-

-

+

Methylorosula sp.

Methylorosula polaris V-22 / 98% (EU586035)

      

(N4)

 

FD2

0.01

5.5

-

-

-

Ancylobacter sp.

Ancylobacter dichloromethanicus DM16 / 97% (EU589386)

      

(X1)

 

CDM

-

7

-

-

-

Pseudomonas sp.

Pseudomonas psychrotolerans C36 / 99% (NR_042191)

      

(K7, L10)

 

FD2

0.01

5.5

-

-

-

Rhodanobacter sp.

Rhodanobacter ginsengisoli GR17-7 / 99% (NR_044127)

      

(L12, N3J, U4, U5, U7)

 

FD2

0.01

5.5

-

-

-

Dyella sp.

Dyella japonica XD53 / 97% (NR_040974)

      

(K4)

 

FD2

0.01

5.5

-

-

-

Xanthomonadaceae

Dokdonella koreensis DS-123 / 93% (NR_043322)

      

(X11)

 

mm126

-

5

-

-

-

Thiomonas sp.

Thiomonas cuprina NBRC 102145 / 98% (NR_041628)

      

(X19)

 

1/100 YPD + 100 mg/l As(III)

-

9.8

+

+

ND

  1. In brackets are the strains code and * indicates the strains isolated via SSMS. In bold are the isolates used for 16S rRNA gene sequencing and physiological experiments. Accession numbers are as follows: N3B (FR874231); Q9 (FR874233); Q8 (FR874235); E10 (FR874226); H7 (FR874234); H7p (FR874241); J9 (FR874236); Q7 (FR874239); U2 (FR874228); X14 (FR874224); I10 (FR874225); K16 (FR874240); N4 (FR874230); X1 (FR874229); K7 (FR874238); L12 (FR874232); K4 (FR874237); X11 (FR874227) and X19 (FR874242). ND: Not determined.