Modeling RNA polymerase competition: the effect of σ-subunit knockout and heat shock on gene transcription level

Biology Direct

Table 4 Crp family-specific PF00325 domains located close to C-termini of Ycf28 proteins in rhodophyte chloroplasts

Sequence	E	Begin	Domain	End
The domains consensus			LpmsLRqeIAdylGlTrETVsRlLtrLrekgLI
Cyanidioschyzon merolae	0.9	114	WRLS-QASLARILGTSRAAIGQVLGDWKKQAWL	145
Cyanidium caldarium	0.00019	157	IYIS-QHDIASILSTTRSTITRLINQLRKDNII	188
Porphyra purpurea	0.00052	184	LTIT-HKVLAQIIGSNRVSITRIISKLIHTKFI	215
Porphyra yezoensis	0.0021	184	FTIT-HKILAQIIGSNRVSVTRILANLLKTKLI	215
Gracilaria tenuistipitata	> 1

In rows, the Crp consensus is followed by the list of rhodophyte species with available chloroplast genomes. Individual domains are aligned against their consensus computed with Crp protein data from the Pfam database. The domain positions are relative to the protein N-terminus. E-values are shown for pair-wise alignments, the region with e-value > 1 is omitted.

ISSN: 1745-6150