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Table 2 Gene loci identified as being under intragenic homologous recombination by two or more of the four substitution analysis methods implemented in this study.

From: Interplay of recombination and selection in the genomes of Chlamydia trachomatis

Locus Tag

Locus

Gene Annotation

Recombination Method

CT674

yscC

Type III secretion structural protein (outer membrane ring)

NSS, MaxChi GeneCon, PHI

CT679

tsf

elongation factor Ts

NSS, MaxChi GeneCon, PHI

CT681

ompA

major outer membrane protein

NSS, MaxChi GeneCon, PHI

CT869

pmpE

polymorphic outer membrane protein

NSS, MaxChi GeneCon, PHI

CT870

pmpF

polymorphic outer membrane protein

NSS, MaxChi GeneCon, PHI

CT872

pmpH

polymorphic outer membrane protein

NSS, MaxChi GeneCon, PHI

CT049

-

hypothetical protein

NSS, MaxChi GeneCon, PHI

CT144

-

hypothetical protein

NSS, MaxChi GeneCon, PHI

CT675

karG

ATP:guanido phosphotransferase

GeneCon, NSS, MaxChi

CT682

pbpB

penicillin-binding protein

GeneCon, NSS, MaxChi

CT686

-

hypothetical protein

NSS, MaxChi, PHI

CT456

-

Translocated actin-recruiting phosphoprotein (tarp protein)

NSS, MaxChi, GeneCon

CT619

-

hypothetical protein

NSS, MaxChi, GeneCon

CT640

recC

exodeoxyribonuclease V gamma chain

NSS, MaxChi

CT643

topA

DNA topoisomerase I/SWI domain fusion protein

MaxChi, GeneCon