Table 1 Pathway databases.
Pathway Database | Access | Primary data source | Vendor/Developer | Web site |
|---|---|---|---|---|
Ingenuity Pathway Analyzer (IPA) | Commercial | Expert curation/data mining | Ingenuity Systems, Inc. | |
BKL TRANSPATH | Commercial | Expert curation | BIOBASE | |
BKL TRANSFAC | Commercial | Expert curation | BIOBASE | |
BioCarta | Free | Expert curation/scientific community contribution | BioCarta, LLC | |
KEGG | Free | Expert curation | Kanehisa Laboratories | |
WikiPathways | Free | Expert curation/scientific community contribution | BiGCaT Bioinformatics (University of Maastricht) and Conklin Lab (Gladstone Institutes, UCSF) | |
Cell Signaling Technology pathways (CST) | Free | Expert curation/scientific community contribution | Cell Signaling Technology, Inc. | |
GeneSpring | Commercial | Expert curation/data mining | Agilent Technologies, Inc. | |
Pathway Studio | Commercial | Data mining | Ariadne Genomics, Inc. | |
MetaCore | Commercial | Expert curation | GeneGo, Inc. |