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Table 2 BLAST hits found for the existing and randomly generated genomes.

From: How many antiviral small interfering RNAs may be encoded by the mammalian genomes?

Virus1

Accession number (NCBI PubMed)

Original Genome2

Markov 2ndorder, percentile3

Markov 5thorder, percentile3

   

5

50

95

5

50

95

av-01

[GenBank:AC_000017]

[GenBank:BK005234]

368

10

20

36,95

15

30

56

av-02

[GenBank:AC_000007]

1413

10

20

35

14,05

29

54,95

av-03

[GenBank:AY599834]

561

14

28

47

22

39

62,95

av-04

[GenBank:AY599837]

70

9,05

19

42,9

16

28

60,95

av-05

[GenBank:AC_000008]

92

9,05

20

37

14

28

63,95

av-06

[GenBank:FJ349096]

55

19

35

58

24,05

47

126,9

av-07

[GenBank:AC_000018] [GenBank:BK005235]

498

16

27

46,95

23,05

41

76,85

av-08

[GenBank:AB448769]

171

11

22

40

16

32

56

av-09

[GenBank:AJ854486]

113

8

18

28,95

14,05

26

50

av-10-02

[GenBank:AB023548]

821

9

21

43

18

32

64

av-10-03

[GenBank:AB330091]

55

23

47

68

   

av-10

[GenBank:DQ149615]

84

61

76

165,7

62

81

186,9

av-11

[GenBank:AC_000015] [GenBank:BK001453]

101

18

30

54,95

27,05

45

88,85

av-12

[GenBank:X73487]

132

24

42

68,9

33

52

80

av-13-02

[GenBank:DQ149616]

72

19,05

47

73,95

   

av-13

[GenBank:AB330094]

815

10

22

44,95

18

33

79,95

av-14

[GenBank:FJ822614]

63

18

31

53,95

25

42

72,9

av-15

[GenBank:DQ149617]

814

11,05

23

46,8

15

31

62

av-16

[GenBank:AY601636]

75

13,05

27

47,95

21

38

66

av-17

[GenBank:AF108105]

89

8

18,5

34,9

14

27

51

av-18

[GenBank:GU191019]

45

19

33

67,95

20

36

67,95

av-19

[GenBank:AB448774]

162

9,05

19

36

14

27

48

av-20

[GenBank:DQ149619]

813

12

25

49,95

   

av-21

[GenBank:AY601633]

53

25

41

61,95

26

46

80,95

av-22

[GenBank:FJ404771]

153

7

18

33

14

26

45

av-23

[GenBank:DQ149621]

801

10

22

41,95

14

29

63,8

av-24

[GenBank:DQ149622]

802

10,05

22

37

16

31

63,95

av-25

[GenBank:DQ149623]

808

11

22

45

   

av-26

[GenBank:EF153474]

119

8

18

36

14,05

27

58,95

av-27-02

[GenBank:DQ149625]

65

22,05

53

73

   

av-27

[GenBank:AB330108]

805

12

23

48,95

16

34

66,7

av-28

[GenBank:FJ824826]

151

8

18

34,95

13

25

45,95

av-29-02

[GenBank:DQ149627]

65

22

52

75,9

   

av-29

[GenBank:AB330110]

802

11

22

41,95

15

31

57,95

av-30

[GenBank:DQ149628]

809

9,05

23

48,95

   

av-31-02

[GenBank:AB330111]

63

63

75

105

64

78

199,6

av-31

[GenBank:DQ149611]

62

22

45

68,95

28

50,5

97,7

av-32

[GenBank:DQ149629]

833

10

23

41,95

   

av-33

[GenBank:DQ149630]

803

9,05

21

43,9

16

33

71,95

av-34

[GenBank:AY737797]

230

18

30

49

26

45

73,9

av-35

[GenBank:AC_000019] [GenBank:BK005236]

125

18

30

56,95

26,05

45

69

av-36

[GenBank:GQ384080]

804

9

23

46,95

   

av-37

[GenBank:AB448778]

123

8

19

39

14

27

51,9

av-38

[GenBank:DQ149633]

828

10,05

23

49,95

   

av-39

[GenBank:DQ149634]

814

11

22,5

45,85

   

av-40-f

[GenBank:L19443]

319

13

27

56

19,05

33

65

av-41

[GenBank:HM565136]

4136

14

27

56,9

22

39

73,95

av-42

[GenBank:DQ149635]

814

11

24

43,9

20

37

82,95

av-43

[GenBank:DQ149636]

811

10,05

23

48,8

   

av-44

[GenBank:DQ149637]

802

8

21

45,85

   

av-45

[GenBank:DQ149638]

821

10

23

45,9

   

av-46

[GenBank:AY875648]

114

8

18

34

14

26

49,95

av-47

[GenBank:DQ149640]

807

10,05

24

56

   

av-48-merged

[GenBank:EF153473]

149

10

18

35,95

14

27

54

av-49-merged

[GenBank:DQ393829]

217

8

18

32,95

16

28

59,95

av-50-merged

[GenBank:AY737798]

83

12

28

47,9

21,05

38

59

av-51

[GenBank:DQ149642]

828

10,05

23,5

52,95

   

herp1

[GenBank:NC_001806]

2480

8

17

33

13

26,5

54

herp2

[GenBank:NC_001798]

79163

10

20

36

19

35

63

herp3

[GenBank:NC_001348]

    

23

41

70

herp4 type1

[GenBank:NC_007605]

1114

23

38

64

29,05

47

63

herp4

[GenBank:NC_009334]

516

25

39

58,95

29

47

69,95

herp5

[GenBank:NC_006273]

1215

8

16

34,95

17

33

78

herp6a

[GenBank:NC_001664]

15330

56

68

99,9

68,05

118

2272

herp6b

[GenBank:NC_000898]

15313

56

68

114

1653

6483

13459

herp7

[GenBank:NC_001716]

40093

85

108

217

84929

1E+05

1E+05

herp8

[GenBank:NC_009333]

2478

13

24

46,85

16

29

51

Bacillus phage BCJA1c

[GenBank:NC_006557]

75

53

65

84

53,05

65

100,7

Burkholderia phage BcepNY3

[GenBank:NC_009604]

17

2

5

12,95

2

5

13

Clostridium phage phi CD119

[GenBank:NC_007917]

344

197

263

1028

194

247

454,5

Klebsiella phage KP32

[GenBank:NC_013647]

20

7

16

30

7

16

31,9

Listeria phage B025

[GenBank:NC_009812]

11268

84

105

173,8

83

106

171,8

Pseudomonas phage phi-2

[GenBank:NC_013638]

58

4,05

12

23,95

4

13

35,85

Staphylococcus phage 53

[GenBank:NC_007049]

119

76

95

150,8

76

93

135,9

Halomonas phage phiHAP-1

[GenBank:NC_010342]

21

3

9

21,95

2,05

9

22

Mycobacterium phage Cali

[GenBank:NC_011271]

51

3,05

10

24

5

12

22

Pseudomonas phage DMS3

[GenBank:NC_008717]

12

4

10

26,95

4

10

24,9

Pseudomonas phage SN

[GenBank:NC_011756]

27

9

19

33

9

20

38

Rhizobium phage 16-3

[GenBank:NC_011103]

14

4

12

25

5

13

26,95

Xylella phage Xfas53

[GenBank:NC_013599]

52

4

12

24

4

12

28,9

  1. 1Virus title. AV 01-51, adenoviral genomes (green). Herp 1-8, herpes virus genomes (yellow). The bacteriophagal genomes are shown in pink.
  2. 2The total number of BLAST hits found for the original viral genome. The default "Nucleotide BLAST" for the "BLAST at NCBI" search criteria were used.
  3. 3The data obtained for the sets of random genomes generated using Markov chain 2nd - and 5th order algorithm. 1.000 random sequences were generated for every existing viral genome. Expected numbers of BLAST hits for the 5th, 50th and 95th percentiles are given, accordingly. The data was generated using specially designed script. The script "BioVictor-Python1" is available upon the request to the authors.
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