The ancient function of RB-E2F Pathway: insights from its evolutionary history

Cao, Lihuan; Peng, Bo; Yao, Lei; Zhang, Xinming; Sun, Kuan; Yang, Xianmei; Yu, Long

doi:10.1186/1745-6150-5-55

Biology Direct

Table 2 Summary of the distribution and sub-grouping of RB Family, E2F7/8 family and DP family proteins in different organisms

From: The ancient function of RB-E2F Pathway: insights from its evolutionary history

	RB family			E2F7/8 Family		DP Family
M. brevicollis	RB-Mb (gi:167523296\|)			E2F7/8-Mb (gi\|167517423)		DP-Mb (gi\|167516980)
	RB1 subgroup	RBL subgroup
T. adhaerens	RB1-Ta (gi\|196012646)	RBL-Ta (gi\|196011866)				DP-Ta (gi\|196015549)
N. vectensis		RBL-Nv (gi\|156399369\|)		E2F7/8-Nv (gi\|156344376)		DP-Nv (gi\|156375187)
C. elegans	LIN35-Ce (gi\|17508261)					DPL-1-Ce (gi\|17532739)
D. melanogaster	RBF1-Dm (gi\|24638969);	RBF2-Dm (gi17737995)				DP-Dm (gi\|17136994)
S. purpuratus	RB1-Sp (gi\|115660767)	RBL-SP (gi\|115968799)				DP-Ce (gi\|72048148)
C. intestinalis		RBL-Ci (gi\|198437827)		E2F7/8-Ci (gi\|198432739)		DP-Ci (gi\|118343721)
B. floridae	RB1-Bf (gi\|260800656)	RBL-Rf (gi\|260834765)				DP-Bf (gi\|260816838)
	RB1	RBL1	RBL2	E2F7	E2F8	DP1	DP2
T. nigroviridis	ENSTNIT00000014938	ENSTNIT00000009683		ENSTNIT00000007956	ENSTNIT00000000955	ENSTNIT00000017108
D. rerio	gi\|118150572	gi\|194578849	gi\|189537876	gi\|169234759	gi\|189521060	gi\|41152118 gi\|189523624	gi\|38016161
X. tropicalis		gi\|213982839		ENSXETT00000031323	ENSXETG00000004436	gi\|58332126	gi\|166158068
G. gallus	gi\|45383327	gi\|118100471	gi\|118123617	gi\|118082443	gi\|118091079	gi\|50730508	gi\|118095071
R. norvegicus	gi\|109501744	gi\|109469134	gi\|13592041	gi\|157821575	gi\|109462000	gi\|71043770	gi\|157818883
M. musculus	gi\|188528630	gi\|213417847	gi\|170932488	gi\|40254337	gi\|67972650	gi\|6678305	gi\|182765448: gi\|149260219
B. taurus	gi\|116004031	gi\|119905907	gi\|148225699	gi\|194666654	gi\|194679774	gi\|115496726	ENSBTAP00000008169
C. familiaris	gi\|73989274	gi\|73992372	gi\|73949852	gi\|73978133	gi\|73988917	gi\|73989562	gi\|73990311
H. sapiens	gi\|108773787	gi\|34577079	gi\|172072597	gi\|145580626	gi\|38505226	gi\|6005900\| gi\|189409125	gi\|5454112

According to the results from Figure 3 and Figure 2, RB family, E2F7/8 family and DP family proteins (accession numbers from genbank or Ensembl Database) identified from M. brevicollis and 16 metazoan organisms were listed. The detail explains could be found in main text.

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	RB family			E2F7/8 Family		DP Family
M. brevicollis	RB-Mb (gi:167523296\|)			E2F7/8-Mb (gi\|167517423)		DP-Mb (gi\|167516980)
	RB1 subgroup	RBL subgroup
T. adhaerens	RB1-Ta (gi\|196012646)	RBL-Ta (gi\|196011866)				DP-Ta (gi\|196015549)
N. vectensis		RBL-Nv (gi\|156399369\|)		E2F7/8-Nv (gi\|156344376)		DP-Nv (gi\|156375187)
C. elegans	LIN35-Ce (gi\|17508261)					DPL-1-Ce (gi\|17532739)
D. melanogaster	RBF1-Dm (gi\|24638969);	RBF2-Dm (gi17737995)				DP-Dm (gi\|17136994)
S. purpuratus	RB1-Sp (gi\|115660767)	RBL-SP (gi\|115968799)				DP-Ce (gi\|72048148)
C. intestinalis		RBL-Ci (gi\|198437827)		E2F7/8-Ci (gi\|198432739)		DP-Ci (gi\|118343721)
B. floridae	RB1-Bf (gi\|260800656)	RBL-Rf (gi\|260834765)				DP-Bf (gi\|260816838)
	RB1	RBL1	RBL2	E2F7	E2F8	DP1	DP2
T. nigroviridis	ENSTNIT00000014938	ENSTNIT00000009683		ENSTNIT00000007956	ENSTNIT00000000955	ENSTNIT00000017108
D. rerio	gi\|118150572	gi\|194578849	gi\|189537876	gi\|169234759	gi\|189521060	gi\|41152118 gi\|189523624	gi\|38016161
X. tropicalis		gi\|213982839		ENSXETT00000031323	ENSXETG00000004436	gi\|58332126	gi\|166158068
G. gallus	gi\|45383327	gi\|118100471	gi\|118123617	gi\|118082443	gi\|118091079	gi\|50730508	gi\|118095071
R. norvegicus	gi\|109501744	gi\|109469134	gi\|13592041	gi\|157821575	gi\|109462000	gi\|71043770	gi\|157818883
M. musculus	gi\|188528630	gi\|213417847	gi\|170932488	gi\|40254337	gi\|67972650	gi\|6678305	gi\|182765448: gi\|149260219
B. taurus	gi\|116004031	gi\|119905907	gi\|148225699	gi\|194666654	gi\|194679774	gi\|115496726	ENSBTAP00000008169
C. familiaris	gi\|73989274	gi\|73992372	gi\|73949852	gi\|73978133	gi\|73988917	gi\|73989562	gi\|73990311
H. sapiens	gi\|108773787	gi\|34577079	gi\|172072597	gi\|145580626	gi\|38505226	gi\|6005900\| gi\|189409125	gi\|5454112