Skip to main content

Table 1 New LTR retroelement sequences retrieved from sequencing projects

From: Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

Element

Group

Gene ID

Chromosome

Host

Structure

Cubel

Bel/Pao

170058572

Unknown

C. quinquefasciatus

LTR-GAG-POL-LTR

Gabel

Bel/Pao

83921752

Unknown

G. aculeatus

LTR-GAG-POL-LTR

Hydra3-1

Bel/Pao

204801980

Unknown

H. magnipapillata

LTR-GAG-POL-LTR

Kobel

Bel/Pao

154426342

Unknown

S. kowalevskii

LTR-GAG-POL-LTR

Mabel

Bel/Pao

170588120

Unknown

B. malayi

GAG-POL

Nabel

Bel/Pao

156542142

Unknown

N. vitripennis

GAG-POL

Purbel

Bel/Pao

115954126

Unknown

S purpuratus

LTR-GAG-POL-LTR

Spirobel

Bel/Pao

109716041

Unknown

T. spiralis

LTR-GAG-POL-LTR

Tribel

Bel/Pao

86577607

III

T. castaneum

LTR-GAG-POL-LTR

Zebel

Bel/Pao

38304119

VII

Zebrafish

LTR-GAG-POL-LTR

Araco

Ty1/Copia

12321377

I

A. thaliana

LTR-GAG-POL-LTR

Humnum

Ty1/Copia

194680628

Unknown

H. numata

LTR-GAG-POL-LTR

Hydra1-1

Ty1/Copia

194993408

Unknown

H. magnipapillata

LTR-GAG-POL-LTR

Hydra1-2

Ty1/Copia

189515648

II

Danio rerio

GAG-POL

Koco

Ty1/Copia

1255921

Unknown

D. koepferae

LTR-GAG-POL-LTR

Oryco1-1

Ty1/Copia

41223814

XII

Oryza sativa

LTR-GAG-POL-LTR

Oryco1-2

Ty1/Copia

32488601

IV

Oryza sativa

LTR-GAG-POL-LTR

Batata

Ty1/Copia

56407676

Unknown

Ipomoea batatas

LTR-GAG-POL-LTR

Poco

Ty1/Copia

157365037

II

P. trichocarpa

LTR-GAG-POL-LTR

Tricopia

Ty1/Copia

86575464

VIII

T. castaneum

LTR-GAG-POL-LTR

Vitico1-1

Ty1/Copia

123691103

XV

V. vinifera

LTR-GAG-POL-LTR

Vitico1-2

Ty1/Copia

147783960

XVI

V. vinifera

LTR-GAG-POL-LTR

Amn-san

Ty3/Gypsy

111608668

Unknown

X. tropicalis

LTR-GAG-POL-LTR

Amn-ni

Ty3/Gypsy

187466581

X

D. rerio

LTR-GAG-POL-LTR

DRM

Ty3/Gypsy

46848209

IV

D. rerio

LTR-GAG-POL-LTR

Hydra2-1

Ty3/Gypsy

204647056

Unknown

H. magnipapillata

LTR-GAG-POL-LTR

SPM

Ty3/Gypsy

115913323

Unknown

S. purpuratus

LTR-GAG-POL-LTR

DrFV-1

Retroviridae

85857417

IV

D. rerio

LTR-GAG-POL-AC-LTR

  1. Acronyms are derived from the host name. As an example: Cubel means "Culex quinquefasciatus Bel/Pao element". AC means additional or accessory genes.