Table 5 Timing comparisons on YN, MYN, γ-MYN and GY methods
From: γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates
Method | Time Required, seconds (hr:min:sec) | Average | ||
|---|---|---|---|---|
human-dog | human-mouse | human-chimp | ||
YN | 332(0:5:32) | 389(0:6:29) | 280(0:4:40) | 334(0:5:34) |
MYN | 529(0:8:49) | 641(0:10:41) | 396(0:6:36) | 522(0:8:42) |
γ-MYN | 533(0:8:53) | 639(0:10:39) | 395(0:6:35) | 522(0:8:42) |
GY | 154309(42:51:49) | 233899(64:58:19) | 602381(167:19:41) | 330196(91:43:16) |