From: γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates
Method | κR - κY > 0.4 | κR - κY < -0.4 | |κR - κY| ≤ 0.4 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
S% | Ka | Ks | ω | S% | Ka | Ks | ω | S% | Ka | Ks | ω | |
human-dog orthologs | ||||||||||||
GY | 24.80% | 0.0691 | 0.4936 | 0.1483 | 24.72% | 0.0723 | 0.4676 | 0.1639 | 24.34% | 0.0874 | 0.5347 | 0.1704 |
YN | 25.09% | 0.0674 | 0.4900 | 0.1531 | 24.96% | 0.0700 | 0.4750 | 0.1695 | 24.27% | 0.0928 | 0.5412 | 0.1746 |
MYN | 23.88% | 0.0664 | 0.5748 | 0.1361 | 26.16% | 0.0711 | 0.4495 | 0.1800 | 24.22% | 0.0939 | 0.5596 | 0.1727 |
γ-MYN | 23.93% | 0.0681 | 0.6462 | 0.1266 | 26.28% | 0.0733 | 0.4962 | 0.1713 | 24.29% | 0.0962 | 0.6227 | 0.1620 |
human-mouse orthologs | ||||||||||||
GY | 25.86% | 0.0901 | 0.7163 | 0.1291 | 25.65% | 0.0961 | 0.7118 | 0.1390 | 25.52% | 0.1128 | 0.7422 | 0.1543 |
YN | 26.07% | 0.0877 | 0.7002 | 0.1344 | 25.69% | 0.0923 | 0.6904 | 0.1465 | 25.31% | 0.1091 | 0.7439 | 0.1564 |
MYN | 24.83% | 0.0863 | 0.8321 | 0.1157 | 26.93% | 0.0940 | 0.6527 | 0.1566 | 25.24% | 0.1090 | 0.7734 | 0.1526 |
γ-MYN | 24.91% | 0.0894 | 0.9501 | 0.1058 | 27.10% | 0.0980 | 0.7390 | 0.1468 | 25.35% | 0.1140 | 0.8934 | 0.1398 |
human-chimp orthologs | ||||||||||||
GY | 25.47% | 0.0273 | 0.0663 | 0.5118 | 25.18% | 0.0262 | 0.0579 | 0.5685 | 25.98% | 0.0228 | 0.0420 | 0.4364 |
YN | 25.79% | 0.0302 | 0.0646 | 0.5237 | 25.33% | 0.0297 | 0.0564 | 0.5790 | 23.81% | 0.0506 | 0.0595 | 0.3893 |
MYN | 24.34% | 0.0299 | 0.0719 | 0.4792 | 26.87% | 0.0307 | 0.0516 | 0.6312 | 23.72% | 0.0493 | 0.0601 | 0.3863 |
γ-MYN | 24.34% | 0.0305 | 0.0741 | 0.4768 | 26.89% | 0.0324 | 0.0530 | 0.6309 | 23.72% | 0.0515 | 0.0626 | 0.3847 |