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Table 9 The number of the Subset 1 RefSeq alignments at various levels of the in-frame identity. Fractions give the differences in the number of alignments by each method and Splign expressed as percentage of the total of sequences in the set.

From: Splign: algorithms for computing spliced alignments with identification of paralogs

  80% 85% 90% 95% 99% 99.5% 99.9% 100%
Splign 13757 13747 13740 13733 13723 13688 12426 10323
Sim4 13214 13179 13145 13110 13044 12958 11662 9680
  -3.91 -4.09 -4.29 -4.49 -4.89 -5.26 -5.50 -4.63
Spidey 13185 13176 13169 13162 13146 13089 11720 9706
  -4.12 -4.11 -4.11 -4.11 -4.16 -4.31 -5.09 -4.44
BLAT 13507 13498 13491 13484 13473 13441 12271 10284
  -1.80 -1.79 -1.79 -1.79 -1.80 -1.78 -1.12 -0.28
GMAP 13744 13733 13726 13718 13706 13671 12408 10307
  -0.09 -0.10 -0.10 -0.11 -0.12 -0.12 -0.13 -0.12
SPA 13715 13706 13698 13691 13676 13635 12373 10275
  -0.30 -0.30 -0.30 -0.30 -0.34 -0.38 -0.38 -0.35