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Table 4 The number of RefSeq alignments at various levels of the overall identity. Fractions give the differences in the number of alignments by each method and Splign expressed as percentage of the total of sequences in the set.

From: Splign: algorithms for computing spliced alignments with identification of paralogs

  80% 85% 90% 95% 99% 99.5% 99.9% 100%
Splign 24255 24254 24243 24218 23947 23420 19337 14898
Sim4 24242 24233 24201 24109 23566 22815 17774 12894
  -0.05 -0.09 -0.17 -0.45 -1.57 -2.49 -6.44 -8.26
Spidey 23648 23491 23270 22972 22408 21789 17782 13488
  -2.50 -3.14 -4.01 -5.13 -6.34 -6.72 -6.41 -5.81
BLAT 24240 24230 24201 24145 23701 23046 19043 14676
  -0.06 -0.10 -0.17 -0.30 -1.01 -1.54 -1.21 -0.91
GMAP 24249 24242 24225 24198 23876 23294 19217 14513
  -0.02 -0.05 -0.07 -0.08 -0.29 -0.52 -0.49 -1.59
SPA 24213 24202 24180 24148 23830 23303 19204 14698
  -0.17 -0.21 -0.26 -0.29 -0.48 -0.48 -0.55 -0.82