Table 6 Detection of previously identified TE-associated proteins. The ability of the different sequence similarity search methods to detect well known cases of TE-derived CDS is indicated with √ and failure to detect is indicated with X.
From: Evaluating the protein coding potential of exonized transposable element sequences
Name | TE-protein | HMMER | BLASTN | BLASTP | BLASTX | TBLASTN | TBLASTX | RM |
|---|---|---|---|---|---|---|---|---|
Telomerase | Reverse transcriptase (LINEs) | √ | X | X | √ | √ | √ | X |
RAG1 | Transposase (Transib superfamily) | X | X | √ | √ | √ | X | X |
CENPB | pogo-like DNA transposase | √ | √ | √ | √ | √ | √ | X |
SETMAR | Hsmar1 transposase | √ | √ | √ | √ | √ | √ | √ |