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Table 11 Evidence for genes specific to the coastal variants of SAR11.

From: Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data

Gene number

Gene annotation

SSD

NCBI

HVR

SAR11_0043

unknown protein*

4

None

1

SAR11_0163

unknown protein*

1 × e-10

1.6

 

SAR11_0414

unknown protein*

1 × e-4

None

 

SAR11_0471

unknown protein*

3 × e-9

2.1

 

SAR11_0542

unknown protein*

3 × e-10

5 × e-11

2

SAR11_0544

unknown protein, possible viral origin

3 × e-6

3 × e-4

2

SAR11_0548

unknown protein

8 × e-9

6 × e-5

2

SAR11_0555

unknown protein

3 × e-8

6 × e-4

2

SAR11_0631

unknown protein*

1.1

None

 

SAR11_0788

unknown protein*

9 × e-5

None

 

SAR11_0875

unknown protein

1 × e-10

None

 

SAR11_0930

unknown protein*

0.47

1.2

 

SAR11_0989

unknown protein

0.61

None

 

SAR11_1165

unknown protein, possible exonuclease

4 × e-7

1.3

3

SAR11_1170

unknown protein

1.8

2.8

3

SAR11_1182

unknown protein

3 × e-10

2.2

 

SAR11_1217

bacterial globin-like

4 × e-10

2 × e-8

4

SAR11_1220

unknown protein

2 × e-4

6.2

4

SAR11_1249

unknown protein

2 × e-6

3.7

 
  1. This list includes all genes for which no homologs were found in the Sargasso Sea Dataset (SSD) with a TBLASTN expect score of less than or equal to 1 × e-10. There were no examples of genes with known, significant physiological functions in this category. The best TBLASTN expect score against the Sargasso Sea Dataset (SSD) and the NCBI non-redundant nucleotide database (NCBInr), and the hypervariable region (HVR) in which the gene was found, are listed. Astericks indicate short CDS that may be gene calling error.