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Table 11 Evidence for genes specific to the coastal variants of SAR11.

From: Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data

Gene number Gene annotation SSD NCBI HVR
SAR11_0043 unknown protein* 4 None 1
SAR11_0163 unknown protein* 1 × e-10 1.6  
SAR11_0414 unknown protein* 1 × e-4 None  
SAR11_0471 unknown protein* 3 × e-9 2.1  
SAR11_0542 unknown protein* 3 × e-10 5 × e-11 2
SAR11_0544 unknown protein, possible viral origin 3 × e-6 3 × e-4 2
SAR11_0548 unknown protein 8 × e-9 6 × e-5 2
SAR11_0555 unknown protein 3 × e-8 6 × e-4 2
SAR11_0631 unknown protein* 1.1 None  
SAR11_0788 unknown protein* 9 × e-5 None  
SAR11_0875 unknown protein 1 × e-10 None  
SAR11_0930 unknown protein* 0.47 1.2  
SAR11_0989 unknown protein 0.61 None  
SAR11_1165 unknown protein, possible exonuclease 4 × e-7 1.3 3
SAR11_1170 unknown protein 1.8 2.8 3
SAR11_1182 unknown protein 3 × e-10 2.2  
SAR11_1217 bacterial globin-like 4 × e-10 2 × e-8 4
SAR11_1220 unknown protein 2 × e-4 6.2 4
SAR11_1249 unknown protein 2 × e-6 3.7  
  1. This list includes all genes for which no homologs were found in the Sargasso Sea Dataset (SSD) with a TBLASTN expect score of less than or equal to 1 × e-10. There were no examples of genes with known, significant physiological functions in this category. The best TBLASTN expect score against the Sargasso Sea Dataset (SSD) and the NCBI non-redundant nucleotide database (NCBInr), and the hypervariable region (HVR) in which the gene was found, are listed. Astericks indicate short CDS that may be gene calling error.