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Table 1 Nucleotide symbols used: M → (A/C), R → (A/G), W → (A/U), Y → (C/U), S → (C/G), K → (G/U). (Table credit [20])

From: Method of predicting Splice Sites based on signal interactions

Protein

High-affinity binding site

Functional ESE

SRp20

WCWWC

GCUCCUCUUCC

 

CUCKUCY

CCUCGUCC

SC35

AGSAGAGUA

GRYYMCYR

 

GWUWCCUGCUA

UGCYGYY

 

GGGUAUGCUG

 
 

GAGCAGUAGKS

 
 

GUUCGAGUA

 
 

UGUUCSAGWU

 
 

AGGAGAU

 

9G8

(GAC)n

 
 

ACGAGAGAY

 
 

WGGACRA

 

SF2/ASF

RGAAGAAC

CRSMSGW

 

AGGACRRAGC

 

SRp40

UGGGAGCRGUYRGCUCGY

YRCRKM

SRp55

 

YYWCWSG

TRA2β

(GAA)n

 

nhRNP Al

UAGGGW

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